2026-09-01 11:55:03,394 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:03,399 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:03,731 INFO:     - Scale ratio 0.2894 saved as template for consistency.
2026-09-01 11:55:03,785 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,173 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,177 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,178 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:04,296 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,296 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:04,385 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_65/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,389 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_65/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,390 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:04,476 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_65/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,477 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:04,566 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_8/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,570 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_8/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,622 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_8/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,676 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_10/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,680 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_10/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,732 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_10/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,788 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,839 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,891 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,945 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_39/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,949 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_39/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:04,950 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:05,033 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_39/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,034 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:05,121 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_41/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,125 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_41/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,175 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_41/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,229 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,233 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,285 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,391 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_58/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,395 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_58/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,447 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_58/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,502 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_88/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,506 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_88/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,507 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:05,591 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_88/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,592 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:05,679 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,683 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,734 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,788 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_228/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,791 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_228/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,792 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:05,920 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_228/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:05,920 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:06,005 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,009 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,059 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,113 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,116 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,166 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,219 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_15/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,222 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_15/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,272 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_15/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,326 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_17/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,329 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_17/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,432 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_17/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,485 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_28/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,489 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_28/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,490 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:06,568 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_28/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,569 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:06,650 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_38/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,654 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_38/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,654 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:06,737 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_38/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,738 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:06,824 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_77/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,827 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_77/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,828 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:06,907 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_77/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:06,908 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,035 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,038 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,088 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,140 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_23/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,144 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_23/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,193 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_23/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,246 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_214/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,249 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_214/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,250 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,329 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_214/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,330 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,411 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_128/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,415 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_128/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,416 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,494 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_128/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,494 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,623 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_207/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,627 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_207/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,675 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_207/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,726 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_217/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,730 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_217/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,731 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,810 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_217/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,811 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:07,893 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_246/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,897 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_246/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,945 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_246/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:07,996 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_261/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,000 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_261/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,000 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:08,123 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_261/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,123 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:08,202 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_281/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,205 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_281/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,206 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:08,285 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_281/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,286 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:08,369 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_69/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,372 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_69/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,420 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_69/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,470 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_87/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,474 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_87/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,520 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_87/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,570 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_95/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,573 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_95/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,669 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_95/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,718 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_111/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,722 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_111/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,723 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:08,800 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_111/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,801 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:08,881 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_139/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,884 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_139/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,885 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:08,960 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_139/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:08,961 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,039 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_156/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,042 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_156/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,089 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_156/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,138 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_197/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,141 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_197/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,142 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,266 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_197/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,267 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,347 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,351 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,352 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,428 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,429 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,508 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,512 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,513 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,590 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,591 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,671 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_223/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,675 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_223/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,676 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,754 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_223/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,754 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,835 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_230/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,838 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_230/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,839 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:09,964 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_230/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:09,964 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,044 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_231/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,048 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_231/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,049 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:10,126 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_231/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,127 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:10,207 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_240/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,210 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_240/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,211 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,286 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_240/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,287 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,366 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,370 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,371 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,448 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,449 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,530 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_47/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,587 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_47/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,631 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_47/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,679 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_98/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,682 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_98/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,683 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,759 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_98/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,760 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:10,839 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_149/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,843 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_149/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,888 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_149/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,937 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_155/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,940 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_155/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:10,986 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_155/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,085 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_45/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,089 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_45/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,133 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_45/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,180 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_191/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,184 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_191/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,228 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_191/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,276 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_219/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,279 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_219/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,325 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_219/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,373 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_242/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,377 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_242/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,378 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:11,452 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_242/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,453 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:11,583 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_275/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,587 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_275/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,633 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_275/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,681 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_279/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,685 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_279/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,686 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:11,760 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_279/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,761 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:11,838 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_195/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,841 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_195/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,842 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:11,915 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_195/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,916 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:11,992 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_277/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,995 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_277/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:11,996 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:12,069 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_277/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,070 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:12,196 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_33/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,200 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_33/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,243 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_33/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,290 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_57/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,293 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_57/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,337 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_57/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,384 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_110/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,387 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_110/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,433 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_110/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,480 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_178/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,484 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_178/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,528 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_178/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,627 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_184/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,630 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_184/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,675 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_184/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,723 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_211/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,727 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_211/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,728 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:12,803 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_211/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,803 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:12,881 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_238/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,885 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_238/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,885 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:12,960 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_238/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:12,961 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:13,039 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_276/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,042 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_276/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,043 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:13,114 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_276/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,115 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:13,239 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_43/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,243 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_43/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,286 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_43/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,333 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_153/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,337 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_153/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,381 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_153/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,427 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_193/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,431 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_193/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,474 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_193/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,518 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_121/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,522 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_121/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,564 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_121/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:13,859 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,190 INFO:     - Scale ratio 0.2894 saved as template for consistency.
2026-09-01 11:55:14,220 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,221 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:14,284 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_65/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,285 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:14,348 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_8/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,378 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_10/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,479 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,509 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_39/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,510 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:14,571 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_41/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,601 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,632 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_58/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,663 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_88/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,664 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:14,726 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,756 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_228/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,757 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:14,819 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,849 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:14,977 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_15/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,007 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_17/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,037 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_28/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,038 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,097 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_38/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,097 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,159 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_77/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,160 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,219 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,248 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_23/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,278 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_214/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,278 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,337 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_128/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,338 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,396 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_207/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,425 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_217/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,426 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,604 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_246/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,633 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_261/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,633 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,690 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_281/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,691 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,750 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_69/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,778 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_87/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,805 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_95/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,833 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_111/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,834 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:15,891 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_139/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,892 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:15,948 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_156/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,975 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_197/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:15,976 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,033 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,034 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,092 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,093 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,151 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_223/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,151 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,209 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_230/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,210 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,267 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_231/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,268 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:16,485 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_240/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,486 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,544 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,545 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,602 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_47/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,628 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_98/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,629 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,686 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_149/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,713 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_155/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,739 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_45/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,766 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_191/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,792 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_219/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,819 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_242/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,820 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,875 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_275/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,903 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_279/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,904 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:16,958 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_195/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:16,959 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:17,014 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_277/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,015 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:17,070 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_33/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,095 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_57/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,121 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_110/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,147 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_178/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,173 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_184/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,396 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_211/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,397 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:17,454 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_238/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,455 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:17,512 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_276/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,513 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:17,565 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_43/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,590 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_153/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,616 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_193/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:17,640 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_121/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:18,856 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_1/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,702 INFO:     - Scale ratio 0.2894 saved as template for consistency.
2026-09-01 11:55:19,732 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_35/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,733 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:19,796 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_65/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,797 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:19,860 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_8/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,889 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_10/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,920 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_16/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,950 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_39/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:19,951 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,013 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_41/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,042 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_44/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,073 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_58/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,173 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_88/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,174 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,236 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_37/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,265 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_228/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,266 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,327 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_2/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,357 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_9/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,386 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_15/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,416 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_17/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,446 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_28/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,447 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,505 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_38/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,506 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,567 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_77/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,568 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,734 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_5/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,763 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_23/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,793 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_214/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,794 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,852 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_128/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,853 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,910 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_207/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,938 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_217/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:20,939 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:20,999 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_246/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,027 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_261/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,028 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,083 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_281/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,084 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,144 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_69/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,171 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_87/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,198 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_95/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,225 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_111/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,225 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:21,414 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_139/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,415 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,471 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_156/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,498 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_197/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,499 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,556 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_173/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,557 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,613 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_208/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,614 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,671 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_223/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,672 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,729 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_230/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,730 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,787 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_231/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,788 WARNING:     - New residues found: ASN144A. Placing them around the core.
2026-09-01 11:55:21,846 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_240/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,847 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,904 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_284/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,904 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:21,961 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_47/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,987 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_98/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:21,988 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,045 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_149/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,071 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_155/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,097 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_45/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,123 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_191/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,149 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_219/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,342 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_242/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,343 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,398 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_275/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,425 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_279/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,426 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,481 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_195/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,482 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,536 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_277/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,537 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,591 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_33/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,616 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_57/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,642 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_110/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,667 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_178/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,693 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_184/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,719 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_211/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,720 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,776 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_238/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,777 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,833 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_276/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,834 WARNING:     - New residues found: ARG35A. Placing them around the core.
2026-09-01 11:55:22,886 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_43/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,911 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_153/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,936 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_193/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.
2026-09-01 11:55:22,961 WARNING: Cannot identify source/target columns in /home/wms/AF2-test/AF2-CatGraph/results/AqTMK/05_plip_interaction_graphs/plip_outputs/AqTMK_121/substrate_connectivity_edges.csv; falling back to substrate_connectivity.txt.